Books:
V.A. Benderskii, D.E. Makarov, and C.A. Wight, Chemical Dynamics at Low Temperatures, Wiley, New York, 1994.
D.E. Makarov, Single-Molecule Science: Physical Principles and Models, CRC Press, 2015.
R. Elber, D.E. Makarov, and H. Orland, Molecular Kinetics in Condensed Phases: Theory, Simulation, and Analysis, Wiley, 2020.
Preprints
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Modern view of activated rate processes: unidirectional fluxes at equilibrium,
correlation functions, and splitting probabilities
A. M. Berezhkovskii, K. Song, and D. E. Makarov,
arXiv:2607.05672 (2026).
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Speed limits on biomolecular processes from fundamental physical constants
D. E. Makarov,
arXiv:2607.04549 (2026).
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Thermodynamic inference from noisy single-molecule time series
T. R. Gingrich, O. A. Igoshin, A. B. Kolomeisky, and
D. E. Makarov,
arXiv:2606.23619 (2026).
Some of the Recent Publications
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Quantum Transition Rates in Arbitrary Physical Processes
A. del Campo, A. Grabarits, D. E. Makarov, and S.-H. Shinn,
Physical Review Letters 136, 210202 (2026).
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Transition State Theory for Dissociation of Dynamic Bonding Networks
E. V. Anslyn and D. E. Makarov,
Journal of Chemical Theory and Computation
22, 1601–1612 (2026).
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Static and Dynamic Rough Energy Landscapes Can Lead to Identical Diffusivity
D. E. Makarov and P. Sollich,
Proceedings of the National Academy of Sciences
123, e2516241123 (2026).
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Time and Length Scales of Incomplete Translocation through Nanopores
D. E. Makarov, A. M. Berezhkovskii, P. A. Gurnev, and S. M. Bezrukov,
Journal of Physical Chemistry Letters
16, 12354–12360 (2025).
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What the Boltzmann Money Game Teaches Us about Statistical Mechanics
(and Maybe Economics)
D. E. Makarov,
Journal of Physical Chemistry Letters
16, 9894–9899 (2025).
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Barrier Recrossing Dynamics and Phenomenological Rate Equations
from Single-Molecule Perspective
A. M. Berezhkovskii and D. E. Makarov,
Journal of Chemical Physics
163, 051101 (2025).
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Hallmarks of Deception in Asset-Exchange Models
K. Blom, D. E. Makarov, and A. Godec,
Physical Review Research
7, 013279 (2025).
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Coarse-Graining Chemical Networks by Trimming to Preserve Energy Dissipation
O. A. Igoshin, A. B. Kolomeisky, and D. E. Makarov,
Journal of Physical Chemistry Letters
16, 1229–1237 (2025).
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Uncovering Dissipation from Coarse Observables:
A Case Study of a Random Walk with Unobserved Internal States
O. A. Igoshin, A. B. Kolomeisky, and D. E. Makarov,
Journal of Chemical Physics
162, 034111 (2025).
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The Significance of Fuzzy Boundaries of the Barrier Regions in
Single-Molecule Measurements of Failed Barrier Crossing Attempts
A. M. Berezhkovskii and D. E. Makarov,
Journal of Chemical Physics
161, 101101 (2024).
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Nonequilibrium statistical mechanics of money/energy exchange models
M. Miao, D. E. Makarov, and K. Blom,
Journal of Physics A: Mathematical and Theoretical
57, 155003 (2024).
A list of classic papers in chemical physics (personal favorites that I like to re-read)
Lecture notes
Landav(f)shitz...